I would like to embed several standard and shinyApp chunks of R code in R notebook:
I start with YAML
---
title: "R Notebook"
output: html_notebook
runtime: shiny
---
Next I load libraries
```{r}
library(tidyverse)
head(iris)
iris1<-iris %>% select(-c(Petal.Length, Petal.Width))
```
Next I use a kmeans example https://shiny.rstudio.com/gallery/kmeans-example.html
```{r, echo = FALSE, }
shinyApp(
ui = pageWithSidebar(
headerPanel('Iris k-means clustering'),
sidebarPanel(
selectInput('xcol', 'X Variable', names(iris)),
selectInput('ycol', 'Y Variable', names(iris),
selected=names(iris)[[2]]),
numericInput('clusters', 'Cluster count', 3,
min = 1, max = 9)
),
mainPanel(
plotOutput('plot1')
)
),
server = function(input, output) {
selectedData <<- reactive({
iris[, c(input$xcol, input$ycol)]
})
clusters <- reactive({
kmeans(selectedData(), input$clusters)
})
output$plot1 <- renderPlot({
palette(c("#E41A1C", "#377EB8", "#4DAF4A", "#984EA3",
"#FF7F00", "#FFFF33", "#A65628", "#F781BF", "#999999"))
par(mar = c(5.1, 4.1, 0, 1))
plot(selectedData(),
col = clusters()$cluster,
pch = 20, cex = 3)
points(clusters()$centers, pch = 4, cex = 4, lwd = 4)
})
},
options=list(height="700")
)
```
Now I would like to use the clusters
variable in the next chunk. Can it be made available globally? Or rendered to a variable that I can use in the next chunk? I was thinking maybe about writing a csv and then making an option to read csv in the next chunk.