I am interesting in to find out the nearby gene of differentially expressed locus from bedtools. 1000 upstream and downstream genes I have a list of differentially expressed locus in .xlsx format. Now I want to know that how can I extract the gene those are the surroundings of locus and how can I see the locus region?? Can anyone give their suggestion?? suggestions really required.
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You will have to be more specific. What have you already tried yourself? SO is not a free coding service. Are you trying to extract all the genes within a 1000 basepair range of your differentially expressed locus? – DCZ Apr 03 '18 at 08:14
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yes..you are getting absolutely right. Could you please guide on this? – Bioifo Apr 03 '18 at 09:42
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What have you already tried yourself? – DCZ Apr 03 '18 at 09:44