First, you need to define what output you need, then, deduce how to treat the input to get the desired output.
Regarding daily data for the first 10 years, it could be a possible option to keep only one day per week. Sub-sampling does not always mean loosing information, and does not always change the final result. It depends on the nature of the collected data: speed of variations of the data, measurement error, noise.
Speed of variations: Refer to Shannon to decide whether no information is lost by sampling once every week instead of every day. Given that for the 2 last year, some people had decided to sample only once every week, it seems to say that they have observed that data does not vary much every day and that a sample every week is enough information. That provides a hint to vote for a final data set that would include one sample every week for the total 12 years. Unless they reduced the sampling for cost reason, making a compromise between accuracy and cost of doing the sampling. Try to find in the literature a what speed your data is expected to vary.
Measurement error: If the measurement error contains a small epsilon that is randomly positive or negative, then, taking the average of 7 days to make a "one week" data will be better because it will increase the chances to cancel this variation. Otherwise, it is enough to do a sub-sampling taking only 1 day per week and throwing other days of the week. I would try both methods, averaging, and sub-sampling, and see if the output is significantly different.