The simplest way to solve the issue is just to add "prepareThreshold=0" to your connection string as in this answer:
jdbc:postgresql://ip:port/db_name?prepareThreshold=0
Or, for example, if you a using several settings in the connection string:
jdbc:postgresql://hostmaster.com:6432,hostsecond.com:6432/dbName?&targetServerType=master&prepareThreshold=0
It's a well-known problem when connecting to the PostgreSQL server via PgBouncer rather than a problem with IntelliJ itself. When loading massive data to the database IntelliJ splits data into chunks and loads them sequentially, each time executing the query and committing the data. By default, PostgreSQL starts using server-side prepared statements after 5 execution of a query.
The driver uses server side prepared statements by default when
PreparedStatement API is used. In order to get to server-side prepare,
you need to execute the query 5 times (that can be configured via
prepareThreshold connection property). An internal counter keeps track
of how many times the statement has been executed and when it reaches
the threshold it will start to use server side prepared statements.
Probably your PgBouncer runs with transaction pooling and the latest version of PbBouncer doesn't support prepared statements with transaction pooling.
How to use prepared statements with transaction pooling?
To make prepared statements work in this mode would need PgBouncer to
keep track of them internally, which it does not do. So the only way
to keep using PgBouncer in this mode is to disable prepared statements
in the client
You can verify that the issue is indeed because of the incorrect use of prepared statements with the pgbouncer via viewing IntelliJ log files. For that go to Help -> Show Log in Explorer, and search for "org.postgresql.util.PSQLException: ERROR: prepared statement" exception.
2022-04-08 12:32:56,484 [693272684] WARN - j.database.dbimport.ImportHead - ERROR: prepared statement "S_3649" does not exist
java.sql.SQLException: ERROR: prepared statement "S_3649" does not exist
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2440)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2183)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:308)
at org.postgresql.jdbc.PgConnection.executeTransactionCommand(PgConnection.java:755)
at org.postgresql.jdbc.PgConnection.commit(PgConnection.java:777)