We have enabled out-of-box Azure easy Authentication/Authorization for Azure web app using Azure AD and we have observed that the callback to authenticate the user after the user has logged in causes timeout intermittently. Exact Error : "500 - The request timed out. The web server failed to respond within the specified time."
Note: We have a ASP.net website solution deployed to Azure. If the same user opens the site in a different browser at the same time then user will not face timeout issue.