How to create a continuous legend (color bar style) for scale_alpha?

Question

Currently, a continuous colour bar legend, guide_colorbar is available only with scale_fill and scale_colour, and not with scale_alpha. The legend which is generated with scale_alpha is of a discrete type (guide_legend).

A small example where color and alpha are mapped to a continuous variable:

scale_color generates a continuous color bar type legend :

ggplot(data = iris, aes(x = Sepal.Length, y = Sepal.Width, color = Sepal.Width)) +
  geom_point()

scale_alpha generates a discrete legend, despite alpha is mapped to a continuous variable:

ggplot(data = iris, aes(x = Sepal.Length, y = Sepal.Width, alpha = Sepal.Width)) +
  geom_point()

Is there some way to get a continuous color bar legend also for scale_alpha?

scale_alpha (or scale_alpha_continous) will indeed plot alpha values on a continuous scale, but the legend is on a discrete scale. I'm looking for a way to make the legend reflect the fact that the plotted values are continuous and not discrete. — filups21, May 24 '17 at 22:01
So you're plotting continuous data with it, but the legend shows the breaks as separate values, whereas you want it to have the appearance of a colourbar, as with `scale_colour_continuous`? Is that right? — Brian, May 25 '17 at 00:18
This is a surprisingly tricky one. I'm working on an answer, but it's apparently coded in as not an intended use case: `Error in guides_train(scales = scales, theme = theme, guides = guides, : Guide 'colorbar' cannot be used for 'alpha'.` — Brian, May 25 '17 at 00:56

Brian · Accepted Answer · 2017-05-25T01:55:48.830

The default minimum alpha for scale_alpha_continuous is 0.1, and the max is 1. I wrote this assuming that you might adjust the minimum to be more visible, but you'd keep the max at 1.

First I set amin to that default of 0.1, and the chosen colour for the points as highcol. Then we use the col2rgb to make a matrix of the RGB values and blend them with white, as modified from this answer written in C#. Note that we're blending with white, so you should be using a theme that has a white background (e.g. theme_classic() as below). Finally we convert that matrix to hex values and paste it into a single string with # in front for standard RGB format.

require(scales)
amin <- 0.1

highcol <- hue_pal()(1)       # or a color name like "blue"

lowcol.hex <- as.hexmode(round(col2rgb(highcol) * amin + 255 * (1 - amin)))
lowcol <- paste0("#",   sep = "",
                 paste(format(lowcol.hex, width = 2), collapse = ""))

Then we plot as you might be planning to already, with your variable of choice set to the alpha aesthetic, and here some geom_points. Then we plot another layer of points, but with colour set to that same variable, and alpha = 0 (or invisible). This gives us our colourbar we need. Then we have to set the range of scale_colour_gradient to our colours from above.

ggplot(iris, aes(Sepal.Length, Sepal.Width, alpha = Petal.Length)) + 
  geom_point(colour = highcol, size = 3) +
  geom_point(aes(colour = Petal.Length), alpha = 0) + 
  scale_colour_gradient(high = highcol, low = lowcol) + 
  guides(alpha = F) + 
  labs(colour = "Alpha\nlabel") +
  theme_classic()

I'm guessing you most often would want to use this with only a single colour, and for that colour to be black. In that simplified case, replace highcol and lowcol with "black" and "grey90". If you want to have multiple colours, each with an alpha varied by some other variable... that's a whole other can of worms and probably not a good idea.

Edited to add in a bad idea!

If you replace colour with fill for my solution above, you can still use colour as an aesthetic. Here I used highcol <-hue_pal()(3)[2] to extract that default green colour.

ggplot(aes(Sepal.Length, Sepal.Width, alpha = Petal.Length)) + 
  geom_point(aes(colour = Species), size = 3) +
  geom_point(aes(fill = Petal.Length), alpha = 0) + 
  scale_fill_gradient(high = highcol, low = lowcol) + 
  guides(alpha = F) + 
  labs(fill = "Petal\nLength") +
  theme_classic()

How to create a continuous legend (color bar style) for scale_alpha?

1 Answers1

Edited to add in a bad idea!

Linked