unable to run .py file however all the codes in python are vaild

Question

from Bio import SeqIO
import re, os
import pandas as pd
from Bio.Seq import Seq
from Bio.Alphabet import generic_dna
from Bio.SeqRecord import SeqRecord
os.chdir('c:\\Users\Workspace\\Desktop')

f_out = os.path.join(os.getcwd(),'convertedgisaid','pandemic2009.txt')
fileNameStruct = "pandemic2009p"
fileCount = 0
fout = open(f_out,'w')
number_of_files = 5

while(fileCount<number_of_files): 
 f_in = os.path.join(os.getcwd(),'convertedgisaid',fileNameStruct+str(fileCount)+".txt")
 f = open(f_in,'r')
 records = f.read()
 records = re.sub("_"," ",records)
 records = records.split('\n')
 records = records[1:]
 for rec in records:
  current = rec.split('|')
  fout.write(current[0]+" "+rec[-1:]+"\n")
 fileCount+=1

fout.close()

unable to run .py file however all the codes in python are vaild! And also is there a reason why python is not recognizing my tabs as well?

Sorry I'm a beginner here :(

What is the error? Update your question by adding the error there — Shivkumar kondi, Jan 31 '17 at 12:37
when i use tab, it wasn't able to read the indentation. Saying that there is: IndentationError: expected an indented block — TJA, Jan 31 '17 at 12:44
but when i run the .py file it just closes without any explanations :/ — TJA, Jan 31 '17 at 12:46

score 0 · Answer 1 · answered Jan 31 '17 at 12:54

0

Try to re-format your code for example using http://www.cleancss.com/python-beautify/

You can read more about how to format you code here: https://www.python.org/dev/peps/pep-0008/#tabs-or-spaces

answered Jan 31 '17 at 12:54

zelenyjan

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unable to run .py file however all the codes in python are vaild

1 Answers1