MWEs
I tried to create the same graph with both version, here are the Bl.ocks:
These examples are adapted from one of the official examples.
Issue
Differences arises when there is more than one connected component. There are two things in particular that don't work for me in version 4:
dragging one connected component makes the others to translate wildly around (I guess) the force center, in a very non-physics way;
on mouse down (even without actually moving) the other connected components move away indefinitely, eventually off screen.
In short, graphs in version 3 are unbreakable, no matter how much you mess with nodes they will eventually return into a stable position.
How can I fix these two behaviors, making the simulation more similar to version 3?