forestplot has unusually large blue dot in graph

Question

Im trying to create a forestplot, but the last row has a giant blue dot, instead of the small dot the other rows have. Any idea how to fix this? these vignettes are what Ive been using to create my code so far. My only thought is that the giant dot could be part of the summary (the dot seems similar) however I am not using a summary.

tab<-structure(list(names = c("(Intercept)", "xxx", "gender", "age"
), betas = c(54.6873516187792, 2.13385086140261, 3.26945254708992, 
             -0.305426541112294), upper = c(62.1308928551509, 4.60545786804931, 
                                            7.29686190386409, -0.112092252532382), lower = c(47.2438103824075, 
                                                                                             -0.337756145244089, -0.757956809684253, -0.498760829692206)), .Names = c("names", 
                                                                                                                                                                      "betas", "upper", "lower"), row.names = c("1", "2", "3", "4"), class = "data.frame")
###################################################################
xlab<-"xxxx"
clrs <- fpColors(box="royalblue",line="darkblue")
tabletext <-list(c(NA, tab$names),append(list(expression(beta)), sprintf("%.2f", tab$betas)))

forestplot(tabletext, 
           mean=c(NA,tab$betas),
           lower=c(NA,tab$lower),
           upper=c(NA,tab$upper),
           col=clrs,
           xlab=xlab,
           vertices = TRUE)

That solved the issue :). Please propose it as a solution. – Rilcon42 Nov 07 '16 at 17:59 — Rilcon42, Nov 07 '16 at 17:59

score 1 · Accepted Answer · answered Nov 07 '16 at 18:16

You can set the size of the boxes to be uniform with boxsize or input a vector with the same length as mean

tab<-structure(list(names = c("(Intercept)", "xxx", "gender", "age"),
                    betas = c(54.6873516187792, 2.13385086140261, 3.26945254708992, -0.305426541112294),
                    upper = c(62.1308928551509, 4.60545786804931, 7.29686190386409, -0.112092252532382),
                    lower = c(47.2438103824075, -0.337756145244089, -0.757956809684253, -0.498760829692206)),
               .Names = c("names", "betas", "upper", "lower"), row.names = c("1", "2", "3", "4"), class = "data.frame")

xlab<-"xxxx"
clrs <- fpColors(box="royalblue",line="darkblue")
tabletext <-list(c(NA, tab$names),append(list(expression(beta)), sprintf("%.2f", tab$betas)))

forestplot(tabletext,
           boxsize = c(NA, .1, .1, .1, .2),
           mean=c(NA,tab$betas),
           lower=c(NA,tab$lower),
           upper=c(NA,tab$upper),
           col=clrs, xlab=xlab, vertices = TRUE)

or

forestplot(tabletext, boxsize = .1,
           mean=c(NA,tab$betas),
           lower=c(NA,tab$lower),
           upper=c(NA,tab$upper),
           col=clrs, xlab=xlab, vertices = TRUE)

Looking into the code for forestplot, you can see how the boxsize is calculated for you. You need to define the following values:

## values needed
upper <- c(NA,tab$upper)
lower <- c(NA,tab$lower)
txt_gp <- fpTxtGp()
nr <- length(upper)


## calculation in forestplot
cwidth <- (upper - lower)
cwidth[cwidth <= 0 | is.na(cwidth)] <- min(cwidth[cwidth > 0])
textHeight <- convertUnit(grobHeight(textGrob("A", gp = do.call(gpar, txt_gp$label))), unitTo = "npc", valueOnly = TRUE)
info <- 1/cwidth * 0.75
info <- info/max(info, na.rm = TRUE)
if (any(textHeight * (nr + 0.5) * 1.5 < info))
  info <- textHeight * (nr + 0.5) * 1.5 * info /
    max(info, na.rm = TRUE) + textHeight * (nr + 0.5) * 1.5/4

info
# [1]         NA 0.02402603 0.02857476 0.02594405 0.10882403

So now you should get the same sizes you had before

forestplot(tabletext,
           boxsize = info,
           mean=c(NA,tab$betas),
           lower=c(NA,tab$lower),
           upper=c(NA,tab$upper),
           col=clrs, xlab=xlab, vertices = TRUE)

forestplot has unusually large blue dot in graph

1 Answers1