First thing to follow a folder is to regard it - your code does not do this.
There are no folders in a ZIP (in fact, even in the file system a "folder" IS a file, just a special one). The file (data) has a name, maybe containing a path (most likely a relative one). If by "go in subdiectories" means, that you want the same relative folder structure of the zipped files in your file system, you must write code to create these folders. I think copy won't do that for you automatically.
I modified your code and added the creation of folders. Mind the config variables I had to add to make it runable, configure it to your environment. I also left all my debug output in it. Code works for me standalone on Windows 7, PHP 5.6
error_reporting(-1 );
ini_set('display_errors', 1);
$zip_path = './test/cgiwsour.zip';
$write_dir = './test'; // base path for output
$zip = new ZipArchive();
if (!$zip->open($zip_path))
die('could not open zip file '.PHP_EOL);
$valid_extensions = ['cpp'];
$create_subfolders = true;
//extract files in zip
for ($i = 0; $i < $zip->numFiles; $i++) {
$file_name = $zip->getNameIndex($i);var_dump($file_name, $i);
$file_info = pathinfo($file_name);//print_r($file_info);
//if ( substr( $file_name, -1 ) == '/' ) continue; // skip directories - need to improve
if (isset($file_info['extension']) && in_array(strtolower($file_info['extension']), $valid_extensions)) {
$tmp_dir = $write_dir;
if ($create_subfolders) {
$dir_parts = explode('/', $file_info['dirname']);
print_r($dir_parts);
foreach($dir_parts as $folder) {
$tmp_dir = $tmp_dir . '/' . $folder;
var_dump($tmp_dir);
if (!file_exists($tmp_dir)) {
$res = mkdir($tmp_dir);
var_dump($res);
echo 'created '.$tmp_dir.PHP_EOL;
}
}
}
else {
$tmp_dir .= '/' . $file_info['dirname'];
}
//extract only images
$res = copy("zip://" . $zip_path . "#" . $file_name, $tmp_dir . '/' . $file_info['basename']);
echo 'match : '.$file_name.PHP_EOL;
var_dump($res);
}
}
$zip->close();
Noticeable is, that mkdir() calls may not work flawlessly on all systems due to access/rights restrictions.