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When I do BedpostX FSL preprocessing I get this message: 

----- Bedpostx Monitor -----
1 slices processed out of 62
2 slices processed out of 62
.
.
.
59 slices processed out of 62
60 slices processed out of 62
An error ocurred. Please check file /Users/...../bedpostx.bedpostX/logs/bpx_postproc.e68944
/Users/..../bedpostx.bedpostX/monitor: line 15: kill: (9187) - No such process
logout

[Process completed]

So I checked the log file: 

Error in logfile:  *File "/Applications/FSL/bin/imglob", line 78
    print "Usage: $0 [-extension/extensions] <list of names>"

                     ^
SyntaxError: Missing parentheses in call to 'print'
  File "/Applications/FSL/bin/imglob", line 78
    print "Usage: $0 [-extension/extensions] <list of names>"

                                      ^
SyntaxError: Missing parentheses in call to 'print'
  File "/Applications/FSL/bin/imglob", line 78
    print "Usage: $0 [-extension/extensions] <list of names>"

                               ^
SyntaxError: Missing parentheses in call to 'print'
  File "/Applications/FSL/bin/imglob", line 78
    print "Usage: $0 [-extension/extensions] <list of names>"

                              ^
SyntaxError: Missing parentheses in call to 'print'*

But I dont know really what it means. It is really strange cause the process was almost done (see above at 61 it stopped). I got almost every outputs. So my questions are:

  1. What does the error mean?
  2. Is the process still completed? (see above there it is said)
  3. If not what can I do to fix the problem?

Here is another screenshot:

Error Message

User42
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mangan
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1 Answers1

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So finally I got a tip from another forum. the bedpostx command is a shell script which uses sometimes python environment itself. Due to the fact that I on my system python 3.5 was installed the error occurs. So I just started the bedpostx command again but this time in a python 2.7 environment terminal.

cheers manun

mangan
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