If I change my root password for MySQL, Webmin prompts me to re-enter it so that it "knows" the password. Where is Webmin storing this password at?
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/etc/webmin/mysql/config
Its the line that starts with pass=
If you're entering it into this file manually, it needs to be in plain text.
Note that this doesn't affect mysql's password, just webmin's login credentials to the mysql service.

Cameron Sanders
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1Its been a while since I've used Webmin, but if you do change a configuration, you likely will need to restart Webmin service. – Cameron Sanders Oct 21 '18 at 20:29