In my VS2015 environment I have a folder structure like this:
--/project
----/wwwroot
-------/js
-------index.html
----web.config
----project.json
...
...
When I publish my app to Azure, Azure puts everything under site/wwwroot. In this case I have two wwwroot folders, one under another. I don't mind this but my home page is not accessible. If I change the virtual applications/directories settings to point to site/wwwroot/wwwroot in Azure, I can see the home page but the application is not usable (WEB APIs, etc).
Any ideas on how to make this work?