I add my mistake. Maybe someone will find it useful.
I mounted the /live directory of letsencrypt and not the whole letsencrypt directory tree.
The problem with this:
The /live folder just holds symlinks to the /archive folder that is not mounted to the docker container with my approach.
(In fact I even mounted a /certs folder that symlinked to the live folder because I had that certs folder in the development environment, same problem..the real (symlinked) files were not mounted)
All problems went away when I mounted /etc/letsencrypt instead of /live
A part of my docker-compose.yml
services:
ngx:
image: nginx
container_name: ngx
ports:
- 80:80
- 443:443
links:
- php-fpm
volumes:
- ../../com/website:/var/www/html/website
- ./nginx.conf:/etc/nginx/nginx.conf
- ./nginx_conf.d/:/etc/nginx/conf.d/
- ./nginx_logs/:/var/log/nginx/
- ../whereever/you/haveit/etc/letsencrypt/:/etc/letsencrypt
The last line in that config is the important one. Changed it from
- ./certs/:/etc/nginx/certs/
And /certs was a symlink to /etc/letsencrypt/live in my case. This can not work as I described above.