I found and studied x86 memory access segmentation fault and it won't work in my code. The difference perhaps being that I don't use separate .text and .data segments but keep all in a single segment by creating a custom ELF header. Does that explain why the SYS_BRK call fails?
The program then continues by making the memory pages read/write/execute etc. I tried to find the minimum code sample that illustrated the issue.
In kdbg the sample does work, but not when started from the command line, hence the message printing.
cpu 386
bits 32
; System calls used
%assign SYS_EXIT 1
%assign SYS_WRITE 4
%assign SYS_BRK 45
%assign SYS_MPROTECT 125
; flags for SYS_MPROTECT
%assign PROT_READ 1
%assign PROT_WRITE 2
%assign PROT_EXEC 4
%assign STDOUT 1
memstart: org 0x08048000
ehdr: ; Elf32_Ehdr (see https://en.wikipedia.org/wiki/Executable_and_Linkable_Format)
db 0x7F, "ELF" ; e_ident[EI_MAG0..EI_MAG03]
db 1 ; e_ident[EI_CLASS]
db 1 ; e_ident[EI_DATA]
db 1 ; e_ident[EI_VERSION]
db 0 ; e_ident[EI_OSABI]
db 0 ; e_ident[EI_ABIVERSION]
times 7 db 0 ; e_ident[EI_PAD]
dw 2 ; e_type
dw 3 ; e_machine
dd 1 ; e_version
dd start ; e_entry
dd phdr - $$ ; e_phoff
dd 0 ; e_shoff
dd 0 ; e_flags
dw ehdrsize ; e_ehsize
dw phdrsize ; e_phentsize
dw 1 ; e_phnum
dw 0 ; e_shentsize
dw 0 ; e_shnum
dw 0 ; e_shstrndx
ehdrsize equ $ - ehdr
phdr: ; Elf32_Phdr
dd 1 ; p_type
dd 0 ; p_offset
dd $$ ; p_vaddr
dd $$ ; p_paddr
dd filesize ; p_filesz
dd filesize ; p_memsz
dd 5 ; p_flags
dd 0x1000 ; p_align
phdrsize equ $ - phdr
memsize: dd 16*4096 ; = 16 * 4K pages
memtop: dd 0
start: ;int 3
xor ebx, ebx ; find the amount of allocated memory
mov eax, SYS_BRK
int 0x80 ; eax contains current memtop
sub eax, memstart ; got enough memory?
test eax, [memsize]
ja memgood
mov eax, memstart ; raise memory limit to memstart + memsize
add eax, [memsize]
mov ebx, eax
mov ecx, eax ; save requested memory size in ecx
mov eax, SYS_BRK
int 0x80
cmp eax, ecx
jne brk_error ; raising memory limit failed
memgood: mov edx, (PROT_READ | PROT_WRITE | PROT_EXEC)
mov ecx, [memsize] ; make memory read/write/execute
mov ebx, memstart
mov eax, SYS_MPROTECT
int 0x80
test eax, eax
js bailout
jmp launch ; lets start the party
brk_error: mov edx, brkelen
mov ecx, brke
mov ebx, STDOUT
mov eax, SYS_WRITE
int 0x80
jmp bailout
brke: db 'SYS_BRK failed, bye', 10
brkelen equ $ - brke
bailout: mov eax, SYS_EXIT
xor ebx, ebx
int 0x80
launch: mov edx, succlen
mov ecx, succ
mov ebx, STDOUT
mov eax, SYS_WRITE
int 0x80
jmp bailout
succ: db 'Success with mem config, bye', 10
succlen equ $ - succ
filesize equ $ - $$