I can launch the gui from command line in Linux using:
java -mx1500m -jar maxent.jar
The html output file has the full command line ie.
java density.MaxEnt nowarnings noprefixes -E "" -E species1
responsecurves jackknife outputdirectory=/home/user/Documents/output samplesfile=/home/user/Documents/species1.csv
environmentallayers=/home/user/Documents/allfiles
noaskoverwrite randomtestpoints=20 -N 1 -N 10 -N 11 -N 12 -N 13 etc etc
but I can't get this to run. Any ideas?