I wrote an XML script for SSMA and ran it from command prompt once and it worked perfectly. Then I decided to run it again and I have pop-up Windows that says "this app will not work on your computer". And in cmd I have "Access denied". I am the owner of the cmd.exe file and SSMAforMySqlConsole.exe file. And I am using Windows 10.
Maybe reinstall of SSMA will do, but this is meant to work later every hour in script manager so I have no assurance that it will not happen again.