Ok bear with me on this one but the solution is simple an annoying at the same time. I ran into this a couple of months ago. I am going to show you my solution using the jstl libraries in my view for handling the collections.
<c:forEach items="${Questions}" var="quest" varStatus="itemsIndex">
<fieldset>
<legend>${quest.section}</legend>
<form:form id="group${itemsIndex.index}" modelAttribute="ChoiceList" action="" method="POST" onsubmit="javascript:ajaxSave($(this).serialize()); return false;">
<a id="Group${quest.id}"></a>
<c:forEach items="${quest.qisQuestionsCollection}" var="quest2" varStatus="itemsRow">
<div style="font-weight: bold; margin: 10px 0px">${quest2.shortText}</div>
( ${quest2.qisQuestionTypes.description} )<br/>
( ${quest2.helpText} )<br/>
<a id="Question${quest2.id}"></a>
<c:choose>
<c:when test="${quest2.qisQuestionTypes.questionType == 'CHOOSEANY'}">
<c:forEach items="${quest2.qisChoicesCollection}" var="quest3" varStatus="indexStatus">
<c:forEach items="${ChoiceFields}" var="CField">
<c:set scope="request" value="${quest3}" var="ChoiceData"/>
<c:set scope="request" value="${CField}" var="ChoiceProperty"/>
<%
answerMap = (HashMap<QisChoice, Answer>) request.getAttribute("AnswerList");
choice = (QisChoice) request.getAttribute("ChoiceData");
if (answerMap.containsKey(choice.getChoiceID())) {
Answer theAnswer = (Answer) answerMap.get(choice.getChoiceID());
if (theAnswer != null) {
if (theAnswer.getChoiceValue() != null) {
request.setAttribute("itemValue", theAnswer.getChoiceValue());
request.setAttribute("itemSelected", true);
} else {
request.setAttribute("itemSelected", false);
request.setAttribute("itemValue", getReflectedValue(
(QisChoice) request.getAttribute("ChoiceData"),
(AccessorStruct) request.getAttribute("ChoiceProperty")));
}
}
} else {
request.setAttribute("itemSelected", false);
request.setAttribute("itemValue", getReflectedValue(
(QisChoice) request.getAttribute("ChoiceData"),
(AccessorStruct) request.getAttribute("ChoiceProperty")));
}
request.setAttribute("itemValue2", getReflectedValue(
(QisChoice) request.getAttribute("ChoiceData"),
(AccessorStruct) request.getAttribute("ChoiceProperty")));
%>
<c:choose>
<c:when test="${CField.visible == 'HIDDEN'}">
<form:hidden value="${itemValue2}" path="question[${itemsRow.index}].choice[${indexStatus.index}].${CField.beanName}" />
</c:when>
<c:otherwise>
<c:choose>
<c:when test="${itemSelected}">
<form:checkbox value="${itemValue}" label="${quest3.description}" path="question[${itemsRow.index}].choice[${indexStatus.index}].${CField.beanName}" checked="true" /><br/>
</c:when>
<c:otherwise>
<form:checkbox value="${itemValue}" label="${quest3.description}" path="question[${itemsRow.index}].choice[${indexStatus.index}].${CField.beanName}" /><br/>
</c:otherwise>
</c:choose>
</c:otherwise>
</c:choose>
</c:forEach>
</c:forEach>
</c:when>
<input type="submit" value="Save Section"
class="button-main" />
</fieldset>
</form:form>
</c:forEach>`
The Key bit is in this line
<form:checkbox value="${itemValue}" label="${quest3.description}" path="question[${itemsRow.index}].choice[${indexStatus.index}].${CField.beanName}" checked="true" /><br/>
To link up the command object with its collection for the postback you have to show the indice of the element as part of the spring path. In my case I have two levels of collections to track
<c:forEach items="${quest.qisQuestionsCollection}" var="quest2" varStatus="itemsRow">
varStatus gives you access to a bean object with the index property you can use to your advantage.
In your case you can do just use the index property of the foreach jstl function in the jsp to generate the indice like I did and append it to the array index notation of your command object. The command object must of course follow the same flow as the path collection names. This works for an infinite number of levels but gets more annoying as we go.
This is a large live example so if you need something smaller show me your markup and I will walk you throgh it.