Just upgraded my MacBook Pro from 10.10 to 10.11, and X11 (XQuartz, actually) stopped working: starts, but quits without visible effect or complaint.
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Turns out, quartz-wm (mentioned in my ~/.xinitrc) has moved from /usr/X11R6/bin/quartz-wm to /usr/X11/bin/quartz-wm.
jackr
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