I have a pandas HDFStore object (pandas uses PyTables to implement HDF5 if that is relevant) with a mydata DataFrame (store["mydata"] = mydata) and have some code that regularly appends data to the mydata DataFrame. When I try to access that HDFStore, I get this error.
//anaconda/lib/python2.7/site-packages/tables/group.py:1213: UserWarning: problems loading leaf ``/mydata/table``::
HDF5 error back trace
File "H5Dio.c", line 173, in H5Dread
can't read data
File "H5Dio.c", line 551, in H5D__read
can't read data
File "H5Dchunk.c", line 1872, in H5D__chunk_read
unable to read raw data chunk
File "H5Dchunk.c", line 2902, in H5D__chunk_lock
data pipeline read failed
File "H5Z.c", line 1375, in H5Z_pipeline
filter returned failure during read
File "H5Zdeflate.c", line 125, in H5Z_filter_deflate
inflate() failed
End of HDF5 error back trace
Problems reading the array data.
The leaf will become an ``UnImplemented`` node.
% (self._g_join(childname), exc))
This is what the store looks like when I print it.
<class 'pandas.io.pytables.HDFStore'>
File path: ../path/to/panda/store.h5
/mydata [invalid_HDFStore node: 'UnImplemented' object has no attribute 'description']
Im not sure why this is happening.
To work with the data, I copied and pasted the .h5 file from another location (without calling .close() if that matters). Could this be the source of the error or is it because I'm appending the data with format=table?
