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I am using Rserver (R version 3.2.1) with docker run -p 8787:8787 bioconductor/devel_base. However, I got the following error:

> source("http://bioconductor.org/workflows.R")
Bioconductor version 3.2 (BiocInstaller 1.19.9), ?biocLite for help
Error: BiocInstaller:::BIOC_VERSION == "3.1" is not TRUE
> workflowInstall("chipseqDB")
Error: could not find function "workflowInstall"

What did I do wrong?

user977828
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  • Looks like you need to have Bioconductor version `3.1` to be installed, and not the devel version `3.2`. And on the [dedicated page](http://www.bioconductor.org/help/workflows/rnaseqGene/), it is written that it has been "Built with Bioconductor (R): 3.1 (3.2.1)". –  Sep 01 '15 at 06:15
  • How is it possible to do? – user977828 Sep 01 '15 at 06:22
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    https://bioconductor.org/developers/useDevel/. You also can use your favorite WSE (web search engine) to find answers. –  Sep 01 '15 at 06:26
  • You are using Bioconductor 3.2 (devel) here; you need to be using 3.1 (release). You can use release by doing `library(BiocInstaller);useDevel(FALSE)`` or set up a separate R installation for release, then the command should work. – Dan Tenenbaum Sep 02 '15 at 02:24

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