(Caveat Emptor: This is not a long term solution)
I was able to get past the CMAKE error by editing the cmake file
pcl-superbuild/toolchains/toolchain-android.cmake
These two changes should get past the errors mentioned above:
set( ANDROID_NDK_HOST_SYSTEM_NAME "linux-x86" ) # Line 468
Should be
set( ANDROID_NDK_HOST_SYSTEM_NAME "linux-x86_64" )
This will generate another error, unless you change the following line (Line 1023)
if( ANDROID_NDK_RELEASE STRGREATER "r8" ) # r8b
Should be
if( ANDROID_NDK_RELEASE STRGREATER "r10" ) # r8b
The first change adds _64 to x86_64. The second adds compatibility for r10d.
This doesn't fix all of the errors though, because BOOST threads don't place nicely with GCC 4.6+. Implement the patch shown at this link (https://svn.boost.org/trac/boost/ticket/6165).
Again, that still doesn't fix all of the errors. (I haven't figured out why this is needed yet, math.h shouldn't need std::). In the file,
pcl-superbuild/CMakeExternals/Source/pcl/common/include/pcl/pcl_macros.h
Edit lines 99-102:
# define pcl_isnan(x) isnan(x)
# define pcl_isfinite(x) isfinite(x)
# define pcl_isinf(x) isinf(x)
They should be:
# define pcl_isnan(x) std::isnan(x)
# define pcl_isfinite(x) std::isfinite(x)
# define pcl_isinf(x) std::isinf(x)
PCL still generates many warnings, but at least it compiles (so far)
**EDIT: **
This doesn't get you all the way (unfortunately) because the boost libraries don't play well with C++11.
To fix this, download boost 1.55 from http://sourceforge.net/projects/boost/files/boost/1.55.0/, and overwrite the boost directory
pcl-superbuild/CMakeExternals/Source/boost/boost_1_45_0
(This directory gets created when you run make for the first time).
Next, modify
pcl-superbuild/CMakeExternals/Source/boost/CMakeLists.txt
and find the line:
file(GLOB lib_srcs ${boost_root}/libs/filesystem/v2/src/*.cpp)
replace it with
file(GLOB lib_srcs ${boost_root}/libs/filesystem/src/*.cpp)
That's as far as I've gotten