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I just upgraded starcluster to use modern machines and I now get the following traceback. Previous versions work fine with identical configs. What changes need to made to the config for it to work? It looks like it is exporting a file that does not exist on modern ubuntu servers. (I asked this question on github and no one has had a solution)

http://pastebin.com/Ur4HD48y

Michael WS
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1 Answers1

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a number of packages have to be changed to get current ubuntu to work with current starcluster.

Need to create a new ami using the following steps:

log in to an ubuntu ami and run the following commands:

  1. apt-get update
  2. apt-get install nfs-kernel-server nfs-common portmap
  3. sudo ln -s /etc/init.d/nfs-kernel-server /etc/init.d/nfs
  4. apt-get install python-scipy python-numpy
  5. ln -s /lib/init/upstart-job /etc/init.d/portmap
  6. ln -s /lib/init/upstart-job /etc/init.d/portmap-wait
  7. wget http://dl.dropbox.com/u/47200624/respin/ge2011.11.tar.gz
  8. tar xvf ge2011.11.tar.gz
  9. mv ge2011.11 /opt/sge6-fresh
Michael WS
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  • Hi, I've created an ami from an ubuntu system but now qsub is not installed ... I am missing something ?? – theholy Apr 21 '15 at 13:40