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I just started using carrot2 directly today (I have previous experience using it as part of @note2).

I am able to search the web and Wikipedia through either http://search.carrot2.org or the workbench application.

When searching the pubmed source, I get the following errors:

java.net.SocketTimeoutException: Read timed out
org.apache.http.conn.ConnectTimeoutException: Connect to eutils.ncbi.nlm.nih.gov/eutils.ncbi.nlm.nih.gov/130.14.29.110 timed out

Could they be transient or version dependent? Is anyone else successfully searching and clustering pubmed records with carrot2?

admdrew
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Mark Miller
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1 Answers1

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Based on input from Dawid Weiss and Jack Park at http://sourceforge.net/p/carrot2/mailman/message/33066121/

NCBI puts various limitations on pubmed queries through http://eutils.ncbi.nlm.nih.gov/entrez/eutils/

They include time-of-day and per-IP limitations. See http://www.ncbi.nlm.nih.gov/books/NBK25497/

Mark Miller
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