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I am hoping you can help me with my problem. I am trying to detect outliers with use of the kmeans algorithm. First I perform the algorithm and choose those objects as possible outliers which have a big distance to their cluster center. Instead of using the absolute distance I want to use the relative distance, i.e. the ration of absolute distance of the object to the cluster center and the average distance of all objects of the cluster to their cluster center. The code for outlier detection based on absolute distance is the following:

# remove species from the data to cluster
iris2 <- iris[,1:4]
kmeans.result <- kmeans(iris2, centers=3)
# cluster centers
kmeans.result$centers
# calculate distances between objects and cluster centers
centers <- kmeans.result$centers[kmeans.result$cluster, ]
distances <- sqrt(rowSums((iris2 - centers)^2))
# pick top 5 largest distances
outliers <- order(distances, decreasing=T)[1:5]
# who are outliers
print(outliers)

But how can I use the relative instead of the absolute distance to find outliers?

Has QUIT--Anony-Mousse
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user3611933
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1 Answers1

8

You just need to calculate the mean distance each observation is from its cluster. You already have those distances, so you just need to average them. Then the rest is simple indexed division:

# calculate mean distances by cluster:
m <- tapply(distances, kmeans.result$cluster,mean)

# divide each distance by the mean for its cluster:
d <- distances/(m[kmeans.result$cluster])

Your outliers:

> d[order(d, decreasing=TRUE)][1:5]
       2        3        3        1        3 
2.706694 2.485078 2.462511 2.388035 2.354807
Thomas
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