LOAD DATA INFILE should fill up only empty values with a specific content.
CSV:
Value1, Value2 -------------- 1 123345 2 3 678901
EXPECTED RESULT:
Value1, Value2 -------------- 1 123345 2 k0000123345 3 678901
LOAD DATA INFILE .... SET .... ean = IFNULL(@d3, CONCAT('k0000',an))
...will result in still empty database values.