HDF5 C++ read the contents of an attribute

Question

I try to read the contents of an Attribute. I use C++ and the HDF5 API. My script looks like this:

#include <iostream>
#include <string>
#ifndef H5_NO_NAMESPACE
#ifndef H5_NO_STD
using std::cout;
using std::endl;
#endif // H5_NO_STD
#endif
#include "H5Cpp.h"
#ifndef H5_NO_NAMESPACE
using namespace H5;
#endif

const H5std_string FILE_NAME ("file.h5");
const H5std_string GROUP_NAME_what ("here/where");

int main (void)
{


    H5File file( FILE_NAME, H5F_ACC_RDONLY );

    /*
     * open Group and Attribute
     */
    Group what= file.openGroup( GROUP_NAME_what );
    Attribute attr = what.openAttribute("lat");


    H5std_string test;

    DataType type = attr.getDataType();
    attr.read(type,test);

    cout << test << endl;

    return 0;

}

what should be written in test is:

ATTRIBUTE "lat" {
                  DATATYPE  H5T_IEEE_F64LE
                  DATASPACE  SCALAR
                  DATA {
                  (0): 48.3515
                  }
               }

but what I get is:

lÐÞþ,H@

Can someone tell my what I made wrong?

Tanks a lot!!

score 5 · Accepted Answer · answered Apr 03 '14 at 19:36

5

I agree with @Mathias. However you also need to give it the address of test:

double test = 0.0;

DataType type = attr.getDataType();
attr.read(type,&test);

cout << test << endl;

When you execute your program you'll get:

$ h5c++ -o test1 test1.cpp && ./test1
48.3515
$

I'm not a C++ programmer however it seems like your not doing the whole OO'nes, as in wouldn't the following make more sense?

int main (void)
{

        double test = 0.0;

        H5File    *file = new H5File( FILE_NAME, H5F_ACC_RDONLY );
        Group     *what = new Group (file->openGroup( GROUP_NAME_what ));
        Attribute *attr = new Attribute(what->openAttribute("lat"));
        DataType  *type = new DataType(attr->getDataType());

        attr->read(*type, &test);
        cout << test << endl;

        delete type;
        delete attr;
        delete what;
        delete file;

        return 0;

}

Yielding:

$ h5c++ -o test test.cpp &&./test
48.3515
$

answered Apr 03 '14 at 19:36

Timothy Brown

2,220
18
22

Thank you both! I can read these Attributes now. @Timothy: I'm not a (C++) programmer as well (; could you explain what you mean with I'm "not doing the whole OO'nes"? – smaica Apr 04 '14 at 06:37
1

As in creating namespaces, class and objects. [Wikipedia](http://en.wikipedia.org/wiki/Object-oriented_programming) have a good section on it. In the above code, the use of `new H5File` to create a file object vs calling the function `H5Fcreate()`. Hope that helps. – Timothy Brown Apr 04 '14 at 13:47
Yes, helped a lot! so, what did I do then, i.e. by writing "Group what= file.openGroup( GROUP_NAME_what );"? Trying to use: "openGroup" as a function instead of a methode of a class? – smaica Apr 07 '14 at 06:20

score 1 · Answer 2 · answered Apr 03 '14 at 19:01

1

You try to write a float H5T_IEEE_F64LE to a string (H5std_string) and that is not working. Try using float test instead.

answered Apr 03 '14 at 19:01

Mathias711

6,568
4
41
58

HDF5 C++ read the contents of an attribute

2 Answers2