While I agree with the previous answers insofar as it is incredibly difficult to understand the entire process, we can at least break it down into categories, from lowest (closest to electrons) to highest (closest to what you actually see).
Lowest
Solid State Device Physics (How transistors work physically)
Circuit Theory (How transistors are combined to create logic gates)
Digital Logic (How logic gates are put together to create digital functions or digital structures i.e. multiplexers, full adders, etc.)
Hardware Organization (How the data path is laid out in the CPU, the components of a Von Neuman machine -> memory, processor, Arithmetic Logic Unit, fetch/decode/execute)
Microinstructions (Bit level programming)
Assembly (Programming with words, but directly specifying registers and takes forever to program even simple things)
Interpreted/Compiled Languages (Programming languages that get compiled or interpreted to assembly; the operating system may be in one of these)
Operating System (Process scheduling, hardware interfaces, abstracts lower levels)
Higher level languages (these kind of appear twice; it depends on the language. Java is done at a very high level, but C goes straight to assembly, and the C compiler is probably written in C)
User Interfaces/Applications/Gui (Last step, making it look pretty)
You can find out a lot about each of these. I'm only somewhat expert in the digital logic side of things. If you want a thorough tutorial on digital logic from the ground up, go to the electrical engineering menu of my website:
affablyevil.wordpress.com
I'm teaching the class, and adding online lessons as I go.