use Bio::seq not working in Perl

Question

I installed CPAN and then successfully installed Bioperl. I cannot find Bio perl folder in /usr/bin

However, the files are present at home/.cpan/build/BioPerl-1.61/Bio/

I am unable to use Bio::SeqIO on Komodo

IDE: Komodo Edit 8

OS: Ubuntu 12.04

Perl -v: 5.14

How should I proceed?

You may well have installed the libs to your homedir instead of system-wide. — Vector Gorgoth, Nov 27 '13 at 20:45
I think you need to get some foundational comprehension in place before pursuing this question on SO. http://www.cpan.org/modules/INSTALL.html -- that's a good place to start. — Vector Gorgoth, Nov 27 '13 at 20:59

score 1 · Answer 1 · answered Feb 19 '16 at 18:40

The cpan command can tell you were something is installed:

    $ cpan -D Mojo::UserAgent
CPAN: Storable loaded ok (v2.53)
Reading '/Users/brian/.cpan/Metadata'
  Database was generated on Thu, 18 Feb 2016 12:41:02 GMT
Mojo::UserAgent
-------------------------------------------------------------------------
    CPAN: Module::CoreList loaded ok (v5.20150520)
(no description)
    S/SR/SRI/Mojolicious-6.46.tar.gz
    /usr/local/perls/perl-5.22.0/lib/site_perl/5.22.0/Mojo/UserAgent.pm
    Installed: undef
    CPAN:      undef  up to date
    Sebastian Riedel (KRAIH)
    kraih@cpan.org

Once you find that directory, ensure that it's in your @INC module search path. You can see what the default is with perl -V.

use Bio::seq not working in Perl

1 Answers1