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I am trying to compile the alignment program AQUA with a .tcl script. I have compiled the programs and set the environmental variables in the .tcl file but I am still getting the following error;

tclsh AQUA.tcl mtDNA.fas
stderr couldn't execute "/home/shump/AQUA/muscle": permission denied couldn't execute "/home/shump/AQUA/rascal": permission denied couldn't execute "/home/shump/AQUA/normd": permission denied One normd file does not exists yet (mtDNA.fas.muscle.normd), full stop

If anyone could put me in the right direction to solve this issue, I would appreciate it.

P

Robin Green
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Peter
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1 Answers1

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Most likely you need to set the execute bit permission on the files mentioned, using:

chmod +x /home/shump/AQUA/muscle /home/shump/AQUA/rascal /home/shump/AQUA/normd
Robin Green
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