I am trying to make some plots of sea ice data. The data is delivered in the EASE-North grid, an example file (HDF4) can be downloaded at:
ftp://n4ftl01u.ecs.nasa.gov/SAN/OTHR/NISE.004/2013.09.30/
I created a custom projection class for the EASE-Grid, it seems to be working (the coastlines align well with the data).
When i try to add a Natural Earth feature, it returns an empty Matplotlib figure.
import gdal
import cartopy
# projection class
class EASE_North(cartopy.crs.Projection):
def __init__(self):
# see: http://www.spatialreference.org/ref/epsg/3408/
proj4_params = {'proj': 'laea',
'lat_0': 90.,
'lon_0': 0,
'x_0': 0,
'y_0': 0,
'a': 6371228,
'b': 6371228,
'units': 'm',
'no_defs': ''}
super(EASE_North, self).__init__(proj4_params)
@property
def boundary(self):
coords = ((self.x_limits[0], self.y_limits[0]),(self.x_limits[1], self.y_limits[0]),
(self.x_limits[1], self.y_limits[1]),(self.x_limits[0], self.y_limits[1]),
(self.x_limits[0], self.y_limits[0]))
return cartopy.crs.sgeom.Polygon(coords).exterior
@property
def threshold(self):
return 1e5
@property
def x_limits(self):
return (-9000000, 9000000)
@property
def y_limits(self):
return (-9000000, 9000000)
# read the data
ds = gdal.Open('D:/NISE_SSMISF17_20130930.HDFEOS')
# this loads the layers for both hemispheres
data = np.array([gdal.Open(name, gdal.GA_ReadOnly).ReadAsArray()
for name, descr in ds.GetSubDatasets() if 'Extent' in name])
ds = None
# mask anything other then sea ice
sea_ice_concentration = np.ma.masked_where((data < 1) | (data > 100), data, 0)
# plot
lim = 3000000
fig, ax = plt.subplots(figsize=(8,8),subplot_kw={'projection': EASE_North(), 'xlim': [-lim,lim], 'ylim': [-lim,lim]})
land = cartopy.feature.NaturalEarthFeature(
category='physical',
name='land',
scale='50m',
facecolor='#dddddd',
edgecolor='none')
#ax.add_feature(land)
ax.coastlines()
# from the metadata in the HDF
extent = [-9036842.762500, 9036842.762500, -9036842.762500, 9036842.762500]
ax.imshow(sea_ice_concentration[0,:,:], cmap=plt.cm.Blues, vmin=1,vmax=100,
interpolation='none', origin='upper', extent=extent, transform=EASE_North())
The script above works fine and produces this result:
But when i uncomment the ax.add_feature(land) it fails without any error, only returning the empty figure. Am i missing something obvious?
Here is the IPython Notebook: http://nbviewer.ipython.org/6779935
My Cartopy build is version 0.9 from Christoph Gohlke's website (thanks!).
edit:
Trying to save the figure does throw an exception:
fig.savefig(r'D:\test.png')
C:\Python27\Lib\site-packages\shapely\speedups\_speedups.pyd in shapely.speedups._speedups.geos_linearring_from_py (shapely/speedups/_speedups.c:2270)()
ValueError: A LinearRing must have at least 3 coordinate tuples
Examining the 'land' cartopy.feature reveals no issues, all polygons pass the .isvalid() and all rings (ext en int) are of 4 or more tuples. So the input shape doesnt seem to be the problem (and works fine in PlateCaree()).
Maybe some rings (like on the southern hemisphere) get 'corrupt' after transforming to EASE_North?
edit2:
When i remove the build-in NE features and load the same shapefile (but with anything below 40N clipped) it works. So it seems like some sort of reprojection issue.
for state in shpreader.Reader(r'D:\ne_50m_land_clipped.shp').geometries():
ax.add_geometries([state], cartopy.crs.PlateCarree(),facecolor='#cccccc', edgecolor='#cccccc')
