I have coded up a low level keyboard hook using SetWindowsHookEX() on Windows CE 4.2 and it seems to work just fine. I am able to see key events using the keyboard and a barcode scanner in notepad and other applications as desired, but I do not see the barcode scanner events in the one application that I want to collect the keys in. I still see events from the keyboard, however, so I know that the keyboard hook is still working and in the hook chain. I have even tried inserting my hook in the chain every millisecond just to see if it would make a difference, but no dice. If I flip back to notepad, it's back to working the way I want it.
I'm not sure what the other application is doing to gain control of the scanner when that application is active that prevents it from acting like a keyboard any more. Any thoughts on this would be greatly appreciated. I've done a bunch of searches without any success. I looked into trying to use RAWINPUT, but it doesn't seem to be supported in Windows CE 4.2 from what I can tell as I don't see the user32.dll in the SDK.