1

Ive been having this problem for over 1 week now. Ive allready gone though the similar problems other people had here on stackoverflow. Im running Mysql 5.6.10.

  1. "query end" step very long at random times
  2. UPDATE statements are in "query end state"
  3. Lots of "Query End" states in MySQL, all connections used in a matter of minutes

It happends randomly. But every 5 minutes or so, the commit takes a very very long time. And the size of the transation insert is usually around 1-2000 rows.

Ive been changing settings so much, ive kind of lost it i decided to create a questions here.

My inserts/updates are sqlfiles that have been generated by my program. Then i have a windows service that runs every 1,5 minutes processing the files. I build up a string of many sql files in a transaction mode. It works 4 out of 5 time very smooth, but 1 out of 5 it jams.

It usually happends on the same table, and most of the times its regarding inserts but also happends on updates. So i doubt it has to do with the structure of my tables but you never know until its solved :)

This is the table structure

CREATE TABLE `int_links_root_1` (
  `IntLinksRootId` bigint(20) NOT NULL AUTO_INCREMENT,
  `UrlId` int(11) NOT NULL,
  `Link` varchar(2000) NOT NULL,
  `AnchorText` varchar(500) DEFAULT NULL,
  `Title` varchar(2000) DEFAULT NULL,
  `PageText` varchar(8000) DEFAULT NULL,
  `Added` datetime DEFAULT NULL,
  `LastModifiedDatetime` datetime DEFAULT NULL,
  PRIMARY KEY (`IntLinksRootId`),
  KEY `Int_Links_UrlId_idx_1` (`UrlId`),
  FULLTEXT KEY `FullText` (`AnchorText`,`Title`,`PageText`),
  CONSTRAINT `Int_Links_UrlId_idx_1` FOREIGN KEY (`UrlId`) REFERENCES `urls` (`UrlId`) ON DELETE CASCADE ON UPDATE NO ACTION
) ENGINE=InnoDB AUTO_INCREMENT=1708708 DEFAULT CHARSET=utf8$$

These are 'show variables'

auto_increment_increment    1
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datadir D:\MySQL6\
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Performance_schema_hosts_lost   0
Performance_schema_locker_lost  0
Performance_schema_mutex_classes_lost   0
Performance_schema_mutex_instances_lost 0
Performance_schema_rwlock_classes_lost  0
Performance_schema_rwlock_instances_lost    0
Performance_schema_session_connect_attrs_lost   0
Performance_schema_socket_classes_lost  0
Performance_schema_socket_instances_lost    0
Performance_schema_stage_classes_lost   0
Performance_schema_statement_classes_lost   0
Performance_schema_table_handles_lost   0
Performance_schema_table_instances_lost 0
Performance_schema_thread_classes_lost  0
Performance_schema_thread_instances_lost    0
Performance_schema_users_lost   0
Prepared_stmt_count 0
Qcache_free_blocks  1
Qcache_free_memory  10468392
Qcache_hits 0
Qcache_inserts  0
Qcache_lowmem_prunes    0
Qcache_not_cached   107
Qcache_queries_in_cache 0
Qcache_total_blocks 1
Queries 56190
Questions   25
Select_full_join    0
Select_full_range_join  0
Select_range    0
Select_range_check  0
Select_scan 10
Slave_heartbeat_period  
Slave_last_heartbeat    
Slave_open_temp_tables  0
Slave_received_heartbeats   
Slave_retried_transactions  
Slave_running   OFF
Slow_launch_threads 0
Slow_queries    2
Sort_merge_passes   0
Sort_range  0
Sort_rows   1122
Sort_scan   2
Ssl_accept_renegotiates 0
Ssl_accepts 0
Ssl_callback_cache_hits 0
Ssl_cipher  
Ssl_cipher_list 
Ssl_client_connects 0
Ssl_connect_renegotiates    0
Ssl_ctx_verify_depth    0
Ssl_ctx_verify_mode 0
Ssl_default_timeout 0
Ssl_finished_accepts    0
Ssl_finished_connects   0
Ssl_server_not_after    
Ssl_server_not_before   
Ssl_session_cache_hits  0
Ssl_session_cache_misses    0
Ssl_session_cache_mode  NONE
Ssl_session_cache_overflows 0
Ssl_session_cache_size  0
Ssl_session_cache_timeouts  0
Ssl_sessions_reused 0
Ssl_used_session_cache_entries  0
Ssl_verify_depth    0
Ssl_verify_mode 0
Ssl_version 
Table_locks_immediate   50440
Table_locks_waited  0
Table_open_cache_hits   4
Table_open_cache_misses 0
Table_open_cache_overflows  0
Tc_log_max_pages_used   0
Tc_log_page_size    0
Tc_log_page_waits   0
Threads_cached  3
Threads_connected   5
Threads_created 8
Threads_running 3
Uptime  3329
Uptime_since_flush_status   3329

I have tried all different innodb_flush_log_at_trx_commit settings. Im certain that my queries are optimal as they run very fast occasionaly, im almost certain that it has to do with my flushing. Ive also tried disabling autocommit but it still happends. Query cache is disabled. But any ideas are more than welcome. Maybe my disks are just to slow?

The system is not in production so i can restart it and test any suggestions.

Please let me know if i can provide any more details.

Community
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Mad Dog Tannen
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1 Answers1

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Are you sure that previous commits already finished ? I am not faniliar with inner structure of mysql but couldnt it rebuild indexing, which is really slow for large tables. Or you can run multiple queries at a time but fifth one is just out of rhreads count and is in queue waiting for rest to finish.

Martin Perry
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  • I have automcommit set to 1. This means the commits are handled internally. I do pass very long massive inserts / update statement wrapped into one statement. I will try again without autocommit and try to manage the transactions myself. Maybe i missed something last time i tried. I also now created a new table without Primary key but unique key on urlid and link. problems still occur so its not the primary key creation which is slower in innodb. – Mad Dog Tannen May 17 '13 at 10:02