I am building a web app with offline database browser. I've got a .db3 file, but can't open it directly using sql.js or html5sql.js. What kind of loader do I need?
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I don't think there is a cross-browser way for opening db3 files. It could be that mobile Safari has a trick up its sleeve, but I'm no expert in that area.
You can create a similar database in Mobile Safari using a so-called Web SQL database. You'd have to re-create your table structure and re-insert the data, but after that you can fire pretty regular SQL queries against the local database.
Note that the Web SQL specification has been abandoned on favor of a simpler local database standard. But it works in current mobile Safari versions, which may be good enough for your needs.

Frank van Puffelen
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