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I have a sparse matrix whose shape is 570000*3000. I tried nima to do NMF (using the default nmf method, and set max_iter to 65). However, I found nimfa very slow. Have anyone used a faster library(can be used by Python/R) or software to do NMF?

Hanfei Sun
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This question (Sparse matrix factorization with Nimfa is very slow with implicit zeros) shows that you might want to try the .todense() version of the code perhaps?

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