So having our classes with attributes in folder how to generate .proto markup files out from them (to get for example C++ code)?
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By "classes with attributes", do you mean attributes suitable for protobuf-net? If so, protobuf-net has a GetProto
method which will provide the schema based on a root type:
string proto = Serializer.GetProto<SomeType>();
Despite the rumors to the contrary, this method in v2 has been re-implemented for quite some time now.

Marc Gravell
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As a matter of fact, you can use this now.. myProto = myModel.GetSchema(typeof(SomeType), ProtoSyntax.Proto3); – Assil Jan 18 '20 at 18:08