I have a C# WinForms application in Visual Studio 2010 that is used by two different customers. The basic functionality of the application is the same for each customer, but certain lines of code (names of stored procedures, resources, certain behaviors) are different between versions. So far, I have kept the application in the same project, and used preprocessor directives when building/publishing to switch between which deployment to use. However, the scope of the project has grown to a point where this is no longer feasible.
Since so much of the code is shared, I'm trying to avoid duplicating source code files. I'm wondering what the best approach is to maintaining an application that requires different versions to be deployed simultaneously.