This question explains that Quercus can be used to install Mantis Bug Tracker ( a php based application) within a tomcat installation. Free Wiki and Bug Tracker for JBoss/Tomcat
I've now deployed Quercus successfully on Tomcat7, but I do not understand how I deploy Mantis onto Quercus, where do I actually put the files ?
Background: I liked the idea of this because currently everything on my server is java-based, and deployed within a single tomcat installation, and I dont want to complicate my deployment environment. I looked at the pure java solution JIRA but it is very heavyweight and requires its own tomcat instance so then I have the complication of multiple ports, I then looked at the open source jtrac but wasn't impressed by its functionality.
Update: I had a rethink, I installed the JIRA product with the defaults except for changing the default port to 8081 and control port to 6 and now it is working side by side with my other tomcat installation no problem :)
Been playing with JIRA as an administrator for a few hours now, and finding it a very slick and easy to use so happy man. Still an answer to the original question maybe useful to others.