While there isn't anything that will directly fix all issues reported by PHP_CodeSniffer, there is another unrelated project that tries to fix issues rather than report on them. In particular, it tries to make your code conform to the new PSR-1 and PSR-2 standards, which PHP_CodeSniffer is only just adding support for at the moment.
It's not going to fix everything, but it is probably as close as you are going to get to fixing some issues: https://github.com/fabpot/PHP-CS-Fixer
However, I strongly recommend not running batch fixing tools over your codebase. If you want your code to conform to a coding standard, you really need to learn it and just fix the errors over time. There is no reason to fix everything in one hit, and doing so with an automated tool is, in my experience, the best way to break your codebase.