About ChIPpeakAnno and makeVennDiagrams

Question

I am using the function vennDiagrams from the ChIPpeakAnno library and I get a strange error message...

venn=makeVennDiagram(RangedDataList (anna, Anna_TSS),NameOfPeaks = c("peaks","TSS"),maxgap = 100, totalTest = 1000)
Warning message:
In findOverlappingPeaks(Peaks[[1]], Peaks[[2]], NameOfPeaks1 = NameOfPeaks[1],  :
Please use select instead of multiple!

I guess the findOverlappingPeaks function is running in the background of the venndiagrams but how can I solve this problem?

score 0 · Answer 1 · edited Sep 27 '12 at 19:19

0

You can safely ignore the warning message. Alternatively, you can download the newest version. Also, you might be interested in reading this article (for setting an appropriate totalTest).

edited Sep 27 '12 at 19:19

j0k

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answered Aug 24 '12 at 19:12

Julie Zhu

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You should add your email in your profile instead of inside an answer. – j0k Sep 27 '12 at 19:20

About ChIPpeakAnno and makeVennDiagrams

1 Answers1