I have a file like this:
2733617 3.00 3 3
2733617 E1b1 8.00 8 16
2733617 E1b1b1b 2.00 2 4
2733617 I1 294.00 296 590
2733617 I2 1.00 1 2
2733617 I2a1 2.00 2 4
sed '/^$/d'
does not work for me. Outfile looks just like infile. It should remove empty lines.