If you're on a GNU/Linux system with a version of glibc2 released in the last 5 or so years, you can modify htpasswd's crypt() implementation to prepend "$6$" to the salt, and then it'd be as simple as:
# htpasswd -d -c .htpasswd someusername
When the salt starts with "$6$", glibc2 will use salted SHA-512, with the up to 16 characters after that being the salt, in the range [a-zA-Z0-9./].
See man 3 crypt.
I'm not aware of any patch to support this, but it should be a simple one.
EDIT: I'd also like to mention that one round of even salted SHA-512 is breakable if your attacker is determined enough. I'd recommend, and am using in most things I've been able to edit, 128000 rounds of PBKDF2 with HMAC-SHA512, but this would be a very extensive edit, unless you want to link htpasswd against openssl, which has a PKCS5_PBKDF2_HMAC() function.
EDIT 2: Also, using openssl to do strong hashing isn't hard, if you're interested:
abraxas ~ # cat pbkdf2.c
#include <string.h>
#include <stdio.h>
#include <openssl/evp.h>
#include <openssl/sha.h>
#define PBKDF2_SALT_PREFIX "$pbkdf2sha512$"
#define PBKDF2_SALT_PREFIX_LENGTH strlen(PBKDF2_SALT_PREFIX)
#define PBKDF2_PRF_ALGORITHM EVP_sha512()
#define PBKDF2_DIGEST_LENGTH SHA512_DIGEST_LENGTH
#define PBKDF2_SALT_LENGTH 32
#define PBKDF2_RESULT_LENGTH PBKDF2_SALT_PREFIX_LENGTH + (2 * PBKDF2_DIGEST_LENGTH) + PBKDF2_SALT_LENGTH + 2
#define PBKDF2_ROUNDS 128000
void hash_password(const char* pass, const unsigned char* salt, char* result)
{
unsigned int i;
static unsigned char digest[PBKDF2_DIGEST_LENGTH];
memcpy(result, PBKDF2_SALT_PREFIX, PBKDF2_SALT_PREFIX_LENGTH);
memcpy(result + PBKDF2_SALT_PREFIX_LENGTH, salt, PBKDF2_SALT_LENGTH);
result[PBKDF2_SALT_PREFIX_LENGTH + PBKDF2_SALT_LENGTH] = '$';
PKCS5_PBKDF2_HMAC(pass, strlen(pass), salt, PBKDF2_SALT_LENGTH, PBKDF2_ROUNDS, PBKDF2_PRF_ALGORITHM, PBKDF2_DIGEST_LENGTH, digest);
for (i = 0; i < sizeof(digest); i++)
sprintf(result + PBKDF2_SALT_PREFIX_LENGTH + PBKDF2_SALT_LENGTH + 1 + (i * 2), "%02x", 255 & digest[i]);
}
int main(void)
{
char result[PBKDF2_RESULT_LENGTH];
char pass[] = "password";
unsigned char salt[] = "178556d2988b6f833f239cd69bc07ed3";
printf("Computing PBKDF2(HMAC-SHA512, '%s', '%s', %d, %d) ...\n", pass, salt, PBKDF2_ROUNDS, PBKDF2_DIGEST_LENGTH);
memset(result, 0, PBKDF2_RESULT_LENGTH);
hash_password(pass, salt, result);
printf("Result: %s\n", result);
return 0;
}
abraxas ~ # gcc -Wall -Wextra -O3 -lssl pbkdf2.c -o pbkdf2
abraxas ~ # time ./pbkdf2
Computing PBKDF2(HMAC-SHA512, 'password', '178556d2988b6f833f239cd69bc07ed3', 128000, 64) ...
Result: $pbkdf2sha512$178556d2988b6f833f239cd69bc07ed3$3acb79896ce3e623c3fac32f91d4421fe360fcdacfb96ee3460902beac26807d28aca4ed01394de2ea37b363ab86ba448286eaf21e1d5b316149c0b9886741a7
real 0m0.320s
user 0m0.319s
sys 0m0.001s
abraxas ~ #