This could be for any number of reasons, without further information I will be just guessing, firstly I would ask what else is on the server besides AD - because it shouldn't need that much space and its not good practice to put a file server (home directories) or roaming profiles on your AD server, second how does the new partition table compare to the old table, third, is the raid array rebuilding since you restored from a different raid backup. Most importantly, are you monitoring the disk I/O, there are lots of free tools to monitor disk IOPS you should benchmark the array to see what speed you are getting, you could also reboot the server and log into the raid controller to view your virtual disks for any possible errors, check what the write policy is and the block size - all of these things also effect performance - if the server only came with 1 disk then the RAID controller wasn't doing much before.
Can you give the model of the server, the raid card, how the server is configured besides just AD controller and have a look at task manager and see what the disk and network are doing. but to some up - the disk is busy doing something probably RAID 10 was enough to cause the bottle neck, it's much slower than RAID 0