I don't think there's any way to set up mysql users from system root without clobbering the existing mysql root user (unless you happen to have a fully-privileged mysql user that doesn't happen to be root.) Some database engines (like Oracle) recognize a particular system user as a DBA user, but to the best of my knowledge MySQL doesn't do that.
If you can find the right person at the university who has the mysql root info, that'll be the simplest way.
Another option would be to set up a separate instance of mysql running off a different data directory, and start with a clean set of user permissions.
Or, as a long shot, poke around in root's home directory for a .my.cnf file that has the mysql root credentials stuffed in it.