I'm in doubt about how to scan my Linux system with Clamav: do I just scan the places where users can upload files (homedirs, their webroots) or do I scan the whole system?
The various sites I've read vary in opinion, some say you needn't scan the Linux-only parts, some say to not scan at all. The latter I've already discarded as I think it sensible to at least scan webroots for hosted viruses, but scanning the whole system is still something I am in doubt about.