Questions related to survminer package
An R package that draws survival curves using 'ggplot2'. See more details at survminer documentation.
Questions tagged [survminer]
95 questions
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How to get per facet p-value in ggsurvplot_facet function
I have a simple question: in using survminer::ggsurvplot_facet function, how can I get the p-value calculcated per each facet? It's displayed on the plot, but I just want to save it for other analysis. Thanks.
sfit <- survfit(Surv(time, status) ~…
Mavershang
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Plot pairwise_survdiff result table together with combined ggsurvplots
I am ploting two survival curves in combination using ggsurvplot_combine: one for the overall survival and another one for survival by a specific variable. I would like to also show the p-values for the survival comparison of each combination in the…
Eduardo Magalhaes
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instalation problem for 'survminer' package in R
I can not install the 'survminer' package in R.
I tried many options already described in the stackoverflow, such as:
library(devtools)
install_github('kassambara/survminer')
user18454320
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How to generate covariate-adjusted cox survival/hazard functions?
I'm using the survminer package to try to generate survival and hazard function graphs for a longitudinal student-level dataset that has 5 subgroups of interest.
I've had success creating a model that shows the survival functions without adjusting…
programmingnewbie
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How to replace the default `geom_ribbon` with `geom_errorbar` in `ggcompetingrisks` from `survminer` package?
How to replace the default geom_ribbon with geom_errorbar in ggcompetingrisks from survminer package?
conf.int = T will put confidence interval as a ribbon layer.
my code:
library(cmprsk);library(survminer)
set.seed(2)
ss <- rexp(100)
gg <-…
Mohamed Rahouma
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Why does the surv_pvalue (or any other) function not work inside a custom function in R?
To generate p-values for the differences between two survival curves, I need to perform a tedious series of steps, which need to be repeated with all combinations of two out of three values that are represented in one column of the starting data…
Thomas
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ggforest in R x tick mark font size
I am trying to change the font size of the x axis tick to larger size and bold, but its not working in ggforest using ggpar. see ate attached image where I have circled the portion I need to change. Is there another way to modify the figure using…
Dushyant Mishra
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Displaying greater than sign in ggsurvplot (unicode errrors)
I am attempting to display a greater than sign in my strata labels for a ggsurvplot object. I generated something similar in a different plot (image below):
Functioning Code from Image Above
kmcurve_spd <- ggsurvplot(km_fitp1_spd,
…
Adam
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How to estimate the median survival with upper and lower confidence limits for the median at 90% confidence levels?
My goal is estimate the median survival with upper and lower confidence limits for the median at 90% confidence levels, using a survfit object.
churn_dat…
Henrich
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ggsurvplot and ggplot lattice ?! Plotting kaplan-meier curve with cumulative incidence function
I would like to plot a kaplan meier curve (KM) and cumulative events or cumulative incidence function (CIF) in one plot as a lattice.
I have switched recently from SAS to R, and in SAS you can do it all in one step using a macro (See this image),…
ebay
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Survival Analysis in Python - Is there any survminer equivalent in Python?
I am a Data Scientist who is an avid R user and currently exploring Python if it helps to broaden my analytics reach. As a first step, I am trying to replicate my current R analyses using Python. Having worked in oncology, I frequently perform…
Navdeep_DS
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How do you flip the coordinates in ggsurvplot?
I am trying to flip x and y for my survival analysis plot (using the survival/survminer package), but when I add coord_flip() to this line of code:
ggsurvplot(poop_fit, data = egg.data, pval = TRUE, conf.int = TRUE, coord_flip())
I get this…
bibigeans
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Compact Letter Display from a matrix of significancies or by hand
I am running a multiple pairwise comparison in R. I'm using the survival package survminer. I'm using the function:
pairwise_survdiff {survminer}
It gives the pairwise comparisons with significance as expected, but doesn't seem to have a way to give…
Colin ISU
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ggforest() keeps giving "Error in `[.data.frame`(data, , var) : undefined columns selected"
So I've been trying to visualize my Cox model results in a forest plot, but keep getting the error Error in [.data.frame(data, , var) : undefined columns selected. This seems somehow odd to me. Defining the model and giving the summary it was…
philipp.kn_98
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Fitting a survival curve with survfit()
I have a survival data, df, as shown below:
df <- structure(list(time_to_event = c(369L, 4597L, 2154L, 4426L, 823L,
4248L, 1045L, 4186L, 1305L, 1960L, 3905L, 5L, 3840L, 3802L, 3730L,
280L, 3678L, 81L, 59L, 3360L, 3318L, 3142L, 2912L, 2909L, 2873L,…
HNSKD
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