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Questions tagged [reticulate]

Usage questions regarding reticulate R package which provides a comprehensive set of tools for interoperability between Python and R.

Questions on the reticulate R package which provides a comprehensive set of tools for interopability between Python and R. More information on tutorials and API reference can be found on reticulate's website.

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running Python script using system2() works in R terminal but not RStudio

Given a simple python script, "test.py": from sys import stdout stdout.write("text out") Calling this from the R terminal using system2() works as expected: python <- "C:/Users/username/Anaconda3/envs/general/python.exe" script <-…
zephryl
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R reticulate on M1 Mac OSX

Python 3.11.3 and R4.3.0 Upon loading any package, already installed via py_install or pip on the terminal, I get this weird error. I don't even know where to start. Somehow rpytools doesn't seem to work. Traceback (most recent call last): File…
inferator
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Unexpected syntax error after loading reticulate package

I've loaded "reticulate" package to run python code in Rstudio. Below the code: # Initialize an empty dictionary D = {} L = [['a', 1], ['b', 2], ['a', 3], ['c', 4]] I get the following error: Error: unexpected '[[' in "L = [[" Why did this…
Fra_Silver
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Unable to load pandas in R reticulate due to missing GLIBCXX_3.4.29

I'm trying to use R's reticulate package for loading python's pandas package in R. I have python3.8, and I installed pandas through conda. In python pandas imports fine but in R, after loading reticulate I get this error: > pd <-…
user1701545
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How to Remove Conda environment in R with reticulate?

I installed the package tabulate in RStudio by the code from the reticulate documentation. With the simple installation code: library(reticulate) py_install("tabulate") It works perfectly except the warning message: the tabulate version is low and…
Pai
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Running Python in R Studio

I'm trying to start using R studio as IDE for python, but I cannot even start doing so because miniconda installation fails to complete. As follows. reticulate::repl_python() No non-system installation of Python could be found. Would you like to…
Diego Polanco
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How to fix 'Error in normalizePath(conda, winslash = "/", mustWork = TRUE) ' when using reticulate package in R

Background I had some python code in a .py file stored in an R studio project. I was successfully using R studio (version 2022.7.1.554) and the reticulate package (verson 1.26) to write and run the python code. I was using anaconda3 rather than…
ifoxfoot
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Error in dir.exists(x) : file name conversion problem -- name too long?

I am trying to import a .py file in RStudio and I am getting the error message: Error in dir.exists(x) : file name conversion problem -- name too long?) I have already tried to run it through a path that only contains English letters and it…
Katerina
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Using Spacyr with GPU through Reticulate

I'd like Spacyr to use GPU in R. I work on ARM64 architecture (Mac M1) and I have installed the latest nighlty version of Spacy, which supports GPU. Although, when I initialize Spacy in R by using reticulate, the model doesn't use GPU. This is what…
askerofquestions2k23
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Error creating conda environment 'r-reticulate' [exit code 1]

I am trying to use BERT in R and for that I need some bits from Python. However when I try to install transformers, e.g., I am getting the error above. These are the lines I tried, all failed with the same…
Omry Atia
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Convert a .Rmd notebook that contains both R and python chunks to an .R script

I would like to convert an R Markdown notebook that contains both R and python chunks to an R script for execution on a backend server. We use a python pipeline to prepare the data. R code continues the analysis. The R markdown notebook comes from…
Paul Rougieux
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R: Error in py_initialize() while using Reticulate package

I am using the Azure ML Notebook with R kernel and reticulate package is installed with version 1.25. When I run the following code: library(reticulate) Sys.which("python") It gives the output as python: '/usr/bin/python' and so, I have used…
ankit
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Saving API terminal output to JSON file

I am exporting data from a sensor. The command to download the logged data from the sensor is: e = Event() libmetawear.mbl_mw_logging_download(d.board, 0, byref(download_handler)) e.wait() download_handler is a function from the sensor…
mkp
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Use reticulate and python in docker container to deploy plumber api

I am trying to deploy plumber API to Azure web service (as web app) using instructions from this site https://veerlevanleemput.medium.com/hosting-a-r-plumber-api-using-azure-app-service-4e78936787cf I have problem with adding python and reticulate…
Mislav Sagovac
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Reticulate not accessing data when using within Shiny

i'm trying to execute some python class object (using reticulate) which works fine when i'm using it outside of Shiny, but when i run my script within Shiny I get the following error message 'Warning: Error in py_run_string_impl: RuntimeError:…
tezzaaa
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