R2WinBUGS is an R package that interfaces with the WinBUGS and OpenBUGS Gibbs samplers.
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Questions tagged [r2winbugs]
78 questions
3
votes
0 answers
R2WinBugs data entry incompatible copy error for Conditional Binomial likelihood, probit link, Random Effects (Psoriasis example)
I was working on the the guide for calculating the effect size of different treatments using a NETWORK META-ANALYSIS as done in example 6.a.
Here
It works fine in winBugs, but I want to do the analysis in R using R2winugs so that I can automate the…
Lionel Duarte
- 121
- 6
3
votes
1 answer
'expected a comma' error in OpenBUGS
I am trying to fit a model using OpenBUGS. Here is the code:
model {
# N observations
for (i in 1:N) {
y[i] ~ dbin(p.bound[i],1)
p.bound[i]<-max(0,min(1,p[i]))
logit(p[i])<-Xbeta[i]
Xbeta[i] <-…
Ecology
- 55
- 5
3
votes
1 answer
This seems to work fine but keep having "command #Bugs:gen.inits cannot be executed (is greyed out)"
I am doing a simple regression model with WinBUGS via R2WinBUGS.
Results appear ok, however WinBUGS keeps showing this line and I don't know why:
command #Bugs:gen.inits cannot be executed (is greyed out)
Does someone have an idea?
Thanks!
The R…
ArnoLB
- 77
- 7
3
votes
0 answers
How to make WinBUGS close when “Trap” occurs
This is just the same question I posted in
CrossValidated, where some considered it off topic. So, I reproduce it here:
I'm using R2WinBUGS to process several datasets in WinBUGS in "batch mode" from R. Occasionally traps occur, mainly due to bad…
Marshall
- 83
- 5
3
votes
1 answer
Show progress R2WinBugs
I am doing several Bayesian analyses using R2WinBugs so I can put them in a for-loop. It works perfectly, R calls WinBugs, then the simulation starts and when it is done the results are saved and the next analysis starts.
When I normally use…
UserX
- 115
- 1
- 1
- 6
3
votes
2 answers
rJAGS version of write.model()?
The R2WinBUGS package has a function called write.model(). The R package rjags has no such function of which I am aware. write.model creates a temporary text file that can be read as a model by WinBUGS.
I know I can enter write.model into the…
rbatt
- 4,677
- 4
- 23
- 41
3
votes
2 answers
multiple definitions of node error in winbugs
I try to use WinBUGS from R via BRugs and R2WinBUGS, the code is followinig:
require(R2WinBUGS)
require(BRugs)
model<-function(){
for(i in 1:N){
y[i] <- x[i] + w[i]
w[i] ~ dnorm(0, sigma.y)
x[i] <- a - b*5 + v[i]
v[i] ~ dnorm(0,…
PepsiCo
- 1,399
- 4
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3
votes
0 answers
R2OpenBUGS: modelling final treatment outcomes from intermediate outcomes
Is anyone using R2OpenBUGS? Should I rather be using r2winbugs? ...
I am trying to model final (2-year) treatment outcomes (e.g. success, death, default or failure) for my sample of patients with a (single) intermediate (3-month) outcome.…
user1014277
- 31
- 1
2
votes
1 answer
Calling WinBUGS14 from R
I'm trying to call WinBUGS from R, but I have not been very successful.
I typed this code in R:
radon.data <- list ("n", "J", "x", "y", "county")
radon.inits <- function (){
list (a=rnorm(J), b=rnorm(1), mu.a=rnorm(1),
sigma.y=runif(1),…
user1290547
- 43
- 5
2
votes
0 answers
Bayesian - decision model with R and R2WinBugs
We want to run a given baysian Model for decision making with R and WinBugs. We are using RStudio and R2WinBugs.
The model is given by:
# Search and Stop
model{
# Data
for (i in 1:ns){
for (q in 1:nq){
y[i,q] ~…
Simon S
- 21
- 2
2
votes
1 answer
Specify logit function explicitly in WinBUGS/OpenBUGS
I'm new to OpenBUGS and I got some problem in fitting a model with the logit() function.
Reading around I found that one possible solution for this would be explicit specify the logit function without using the WinBUGS’ own logit function:
In…
Vincenzo G
- 41
- 5
2
votes
0 answers
Cannot bracket slice for node, WinBUGS
So I have been working on this code for awhile running hazard models for a population and for one of my initial parameters it cannot figure out how to fix it. This is the area of code that is giving me problems. I am coding in Notebook++, running in…
K. Westfall
- 21
- 3
2
votes
0 answers
spatial.exp on WinBUGS
I really hope this is not a stupid question, but I am trying to simulate a very simple spatial Bayesian model and I keep getting some sort of "incopmatible copy" message on the WinBUGS window.
I am simulating…
Miguel Acevedo
- 21
- 1
2
votes
1 answer
set.seed in WinBUGS through R
Is it possible to set a seed in WinBUGS to reproduce parameter estimates like one can do with set.seed in R?
Mark Miller
- 12,483
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- 132
2
votes
1 answer
Passing variable to WinBugs model in R
I am using the R2WinBugs package. I would like to pass two parameter that are calculated previously in the R script to the model function
c0yy <- 0.1
syy <- 0.0001
#Model
model <- function(c0yy,syy){
#Likelihood
for(i in 1:n){
y[i] ~…
user3036416
- 1,205
- 2
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