Questions tagged [pubchem]

Free database of chemical structures of small organic molecules and information on their biological activities

PubChem is a database of chemical molecules and their activities against biological assays. The system is maintained by the National Center for Biotechnology Information (NCBI), a component of the National Library of Medicine, which is part of the United States National Institutes of Health (NIH). PubChem can be accessed for free through a web user interface. Millions of compound structures and descriptive datasets can be freely downloaded via FTP. PubChem contains 162 Millions substance descriptions and small molecules. More than 80 database vendors contribute to the growing PubChem database.

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Application requires JavaScript error when Using Power Query to webscrape

Trying to access PubChem via Power BI however I am running into the following issue: This application requires Javascript. Please turn on Javascript in order to use this application. Just wondering if anyone knows why this occurs and if there is any…
Nick
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Database of chemicals with associated properties?

I think pubchem has what I need here, I want a database that is -or could be converted into- a table of chemical identifier : series of properties for a school project. The issue is, pubchem is too large, the only file they offer that I know how to…
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TypeError: get_properties() missing 1 required positional argument: 'identifier'

I have been trying to figure out this error on python using PubChemPy but I'm stuck. I am trying to input a list of chemicals and gen the Canonical Smiles information for a list of about 200 chemicals. This is the code I am using for i in…
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Is there anyway to call PubChem API In python?

I have been using PubChem API to convert Chemical smiles to the structure but still have an error. Here is my google colab I try with PIL image plus TKinter https://colab.research.google.com/drive/1TE9WxXwaWKSLQzKRQoNlWFqztVSoIxB7 My desired output…
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How to parse a JSON file like this?

I'd like to parse this JSON file. to get something like this with the 2nd column as Canonical SMILES and 3rd column as Isomeric SMILES. 5317139CCCC=C1C2=C(C3C(O3)CC2)C(=O)O1CCC/C=C\\1/C2=C(C3C(O3)CC2)C(=O)O1 Could anybody show me how…
user1424739
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